All modules for which code is available
- unravel.allen_institute.abca.merfish.merfish_cells_to_nii
- unravel.allen_institute.abca.merfish.merfish_slice
- unravel.allen_institute.abca.merfish.utils
- unravel.allen_institute.abca.sunburst.mean_expression_color_scale
- unravel.allen_institute.abca.sunburst.percent_expression_color_scale
- unravel.allen_institute.abca.sunburst.sunburst
- unravel.allen_institute.abca.sunburst.sunburst_expression
- unravel.allen_institute.abca.sunburst.sunburst_filter_by_expression
- unravel.allen_institute.abca.sunburst.sunburst_filter_by_proportion
- unravel.allen_institute.genetic_tools_atlas.auto_crop
- unravel.allen_institute.genetic_tools_atlas.bbox_crop
- unravel.allen_institute.genetic_tools_atlas.org_samples
- unravel.allen_institute.genetic_tools_atlas.simplify_metadata
- unravel.allen_institute.mapmysections.cell_type_proportions
- unravel.allen_institute.mapmysections.cell_type_proportions_concat
- unravel.allen_institute.mapmysections.csv_concat_with_source
- unravel.allen_institute.mapmysections.segmentation_summary
- unravel.cluster_stats.brain_model
- unravel.cluster_stats.clusters
- unravel.cluster_stats.crop
- unravel.cluster_stats.cstats
- unravel.cluster_stats.effect_sizes.effect_sizes
- unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__absolute
- unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__relative
- unravel.cluster_stats.fdr
- unravel.cluster_stats.fdr_range
- unravel.cluster_stats.find_incongruent_clusters
- unravel.cluster_stats.fstat_sig_vx_mask
- unravel.cluster_stats.group_bilateral_data
- unravel.cluster_stats.index
- unravel.cluster_stats.legend
- unravel.cluster_stats.mean_IF
- unravel.cluster_stats.mean_IF_summary
- unravel.cluster_stats.org_data
- unravel.cluster_stats.prism
- unravel.cluster_stats.recursively_mirror_rev_cluster_indices
- unravel.cluster_stats.stats_table
- unravel.cluster_stats.summary
- unravel.cluster_stats.summary_config
- unravel.cluster_stats.sunburst
- unravel.cluster_stats.table
- unravel.cluster_stats.validation
- unravel.core.config
- unravel.core.help_formatter
- unravel.core.img_io
- unravel.core.img_tools
- unravel.core.utils
- unravel.image_io.convert_img
- unravel.image_io.h5_to_tifs
- unravel.image_io.img_to_npy
- unravel.image_io.img_to_points
- unravel.image_io.io_nii
- unravel.image_io.metadata
- unravel.image_io.nii_hd
- unravel.image_io.nii_info
- unravel.image_io.nii_to_tifs
- unravel.image_io.nii_to_zarr
- unravel.image_io.points_to_img
- unravel.image_io.reorient_nii
- unravel.image_io.tif_to_tifs
- unravel.image_io.zarr_compress
- unravel.image_io.zarr_to_nii
- unravel.image_tools.DoG
- unravel.image_tools.atlas.relabel_nii
- unravel.image_tools.atlas.wireframe
- unravel.image_tools.avg
- unravel.image_tools.bbox
- unravel.image_tools.extend
- unravel.image_tools.math
- unravel.image_tools.max
- unravel.image_tools.modify_labels
- unravel.image_tools.pad
- unravel.image_tools.rb
- unravel.image_tools.resample
- unravel.image_tools.resample_points
- unravel.image_tools.spatial_averaging
- unravel.image_tools.transpose_axes
- unravel.image_tools.unique_intensities
- unravel.region_stats.rstats
- unravel.region_stats.rstats_mean_IF
- unravel.region_stats.rstats_mean_IF_in_segmented_voxels
- unravel.region_stats.rstats_mean_IF_summary
- unravel.region_stats.rstats_summary
- unravel.register.affine_initializer
- unravel.register.affine_initializer_check
- unravel.register.reg
- unravel.register.reg_check
- unravel.register.reg_check_brain_mask
- unravel.register.reg_check_fsleyes
- unravel.register.reg_prep
- unravel.segment.brain_mask
- unravel.segment.copy_tifs
- unravel.segment.ilastik_pixel_classification
- unravel.segment.labels_to_masks
- unravel.tabular.columns
- unravel.tabular.edit_columns
- unravel.tabular.filter_rows
- unravel.tabular.key_value_to_table
- unravel.tabular.unique_values
- unravel.tabular.utils
- unravel.unravel_commands
- unravel.utilities.aggregate_files_from_sample_dirs
- unravel.utilities.aggregate_files_recursively
- unravel.utilities.clean_tif_dirs
- unravel.utilities.get_samples
- unravel.utilities.points_compressor
- unravel.utilities.prepend_conditions
- unravel.utilities.process_samples
- unravel.utilities.region_info
- unravel.utilities.rename
- unravel.utilities.toggle_samples
- unravel.voxel_stats.apply_mask
- unravel.voxel_stats.hemi_to_LR_avg
- unravel.voxel_stats.mirror
- unravel.voxel_stats.other.IF_outliers
- unravel.voxel_stats.other.r_to_p
- unravel.voxel_stats.vstats
- unravel.voxel_stats.vstats_check_fsleyes
- unravel.voxel_stats.vstats_prep
- unravel.voxel_stats.whole_to_LR_avg
- unravel.voxel_stats.z_score
- unravel.voxel_stats.z_score_cwd
- unravel.warp.ccf30_to_merfish
- unravel.warp.points_to_atlas
- unravel.warp.to_atlas
- unravel.warp.to_fixed
- unravel.warp.to_native
- unravel.warp.warp