Python Module Index

u


	u
	`unravel`
	`unravel.allen_institute.abca.merfish.merfish_cells_to_nii`
	`unravel.allen_institute.abca.merfish.merfish_slice`
	`unravel.allen_institute.abca.merfish.utils`
	`unravel.allen_institute.abca.sunburst.mean_expression_color_scale`
	`unravel.allen_institute.abca.sunburst.percent_expression_color_scale`
	`unravel.allen_institute.abca.sunburst.sunburst`
	`unravel.allen_institute.abca.sunburst.sunburst_expression`
	`unravel.allen_institute.abca.sunburst.sunburst_filter_by_expression`
	`unravel.allen_institute.abca.sunburst.sunburst_filter_by_proportion`
	`unravel.allen_institute.genetic_tools_atlas.auto_crop`
	`unravel.allen_institute.genetic_tools_atlas.bbox_crop`
	`unravel.allen_institute.genetic_tools_atlas.org_samples`
	`unravel.allen_institute.genetic_tools_atlas.simplify_metadata`
	`unravel.allen_institute.mapmysections.cell_type_proportions`
	`unravel.allen_institute.mapmysections.cell_type_proportions_concat`
	`unravel.allen_institute.mapmysections.csv_concat_with_source`
	`unravel.allen_institute.mapmysections.segmentation_summary`
	`unravel.cluster_stats.brain_model`
	`unravel.cluster_stats.clusters`
	`unravel.cluster_stats.crop`
	`unravel.cluster_stats.cstats`
	`unravel.cluster_stats.effect_sizes.effect_sizes`
	`unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__absolute`
	`unravel.cluster_stats.effect_sizes.effect_sizes_by_sex__relative`
	`unravel.cluster_stats.fdr`
	`unravel.cluster_stats.fdr_range`
	`unravel.cluster_stats.find_incongruent_clusters`
	`unravel.cluster_stats.fstat_sig_vx_mask`
	`unravel.cluster_stats.group_bilateral_data`
	`unravel.cluster_stats.index`
	`unravel.cluster_stats.legend`
	`unravel.cluster_stats.mean_IF`
	`unravel.cluster_stats.mean_IF_summary`
	`unravel.cluster_stats.org_data`
	`unravel.cluster_stats.prism`
	`unravel.cluster_stats.recursively_mirror_rev_cluster_indices`
	`unravel.cluster_stats.stats_table`
	`unravel.cluster_stats.summary`
	`unravel.cluster_stats.summary_config`
	`unravel.cluster_stats.sunburst`
	`unravel.cluster_stats.table`
	`unravel.cluster_stats.validation`
	`unravel.core.config`
	`unravel.core.help_formatter`
	`unravel.core.img_io`
	`unravel.core.img_tools`
	`unravel.core.utils`
	`unravel.image_io.convert_img`
	`unravel.image_io.h5_to_tifs`
	`unravel.image_io.img_to_npy`
	`unravel.image_io.img_to_points`
	`unravel.image_io.io_nii`
	`unravel.image_io.metadata`
	`unravel.image_io.nii_hd`
	`unravel.image_io.nii_info`
	`unravel.image_io.nii_to_tifs`
	`unravel.image_io.nii_to_zarr`
	`unravel.image_io.points_to_img`
	`unravel.image_io.reorient_nii`
	`unravel.image_io.tif_to_tifs`
	`unravel.image_io.zarr_compress`
	`unravel.image_io.zarr_to_nii`
	`unravel.image_tools.atlas.relabel_nii`
	`unravel.image_tools.atlas.wireframe`
	`unravel.image_tools.avg`
	`unravel.image_tools.bbox`
	`unravel.image_tools.DoG`
	`unravel.image_tools.extend`
	`unravel.image_tools.math`
	`unravel.image_tools.max`
	`unravel.image_tools.modify_labels`
	`unravel.image_tools.pad`
	`unravel.image_tools.rb`
	`unravel.image_tools.resample`
	`unravel.image_tools.resample_points`
	`unravel.image_tools.spatial_averaging`
	`unravel.image_tools.transpose_axes`
	`unravel.image_tools.unique_intensities`
	`unravel.region_stats.rstats`
	`unravel.region_stats.rstats_mean_IF`
	`unravel.region_stats.rstats_mean_IF_in_segmented_voxels`
	`unravel.region_stats.rstats_mean_IF_summary`
	`unravel.region_stats.rstats_summary`
	`unravel.register.affine_initializer`
	`unravel.register.affine_initializer_check`
	`unravel.register.reg`
	`unravel.register.reg_check`
	`unravel.register.reg_check_brain_mask`
	`unravel.register.reg_check_fsleyes`
	`unravel.register.reg_prep`
	`unravel.segment.brain_mask`
	`unravel.segment.copy_tifs`
	`unravel.segment.ilastik_pixel_classification`
	`unravel.segment.labels_to_masks`
	`unravel.tabular.columns`
	`unravel.tabular.edit_columns`
	`unravel.tabular.filter_rows`
	`unravel.tabular.key_value_to_table`
	`unravel.tabular.unique_values`
	`unravel.tabular.utils`
	`unravel.unravel_commands`
	`unravel.utilities.aggregate_files_from_sample_dirs`
	`unravel.utilities.aggregate_files_recursively`
	`unravel.utilities.clean_tif_dirs`
	`unravel.utilities.get_samples`
	`unravel.utilities.points_compressor`
	`unravel.utilities.prepend_conditions`
	`unravel.utilities.process_samples`
	`unravel.utilities.region_info`
	`unravel.utilities.rename`
	`unravel.utilities.toggle_samples`
	`unravel.voxel_stats.apply_mask`
	`unravel.voxel_stats.hemi_to_LR_avg`
	`unravel.voxel_stats.mirror`
	`unravel.voxel_stats.other.IF_outliers`
	`unravel.voxel_stats.other.r_to_p`
	`unravel.voxel_stats.vstats`
	`unravel.voxel_stats.vstats_check_fsleyes`
	`unravel.voxel_stats.vstats_prep`
	`unravel.voxel_stats.whole_to_LR_avg`
	`unravel.voxel_stats.z_score`
	`unravel.voxel_stats.z_score_cwd`
	`unravel.warp.ccf30_to_merfish`
	`unravel.warp.points_to_atlas`
	`unravel.warp.to_atlas`
	`unravel.warp.to_fixed`
	`unravel.warp.to_native`
	`unravel.warp.warp`