unravel.utilities.aggregate_files_from_sample_dirs module

Use utils_agg_files (agg) from UNRAVEL to aggregate files from sample?? directories to a target directory.

Next commands for voxel-wise stats:

• If analyzing whole brains, consider using vstats_whole_to_avg to average left and right hemispheres.

• If using side-specific z-scoring, use vstats_hemi_to_avg to average the images.

• Prepend condition names with utils_prepend.

• Check images in FSLeyes and run vstats to perform voxel-wise stats.

Next command for regional stats:

• Use rstats_summary to summarize the results

Usage:

utils_agg_files -i ‘atlas_space/<asterisk>_cfos_rb4_30um_CCF_space_z_LRavg.nii.gz’ [-td target_output_dir] [-d list of paths] [-p sample??] [-v]

Usage to prepend sample folder name to the name of files being copied:

utils_agg_files -i ‘atlas_space/cfos_rb4_30um_CCF_space_z_LRavg.nii.gz’ -a [-td target_output_dir] [-d list of paths] [-p sample??] [-v]

unravel.utilities.aggregate_files_from_sample_dirs.parse_args()

unravel.utilities.aggregate_files_from_sample_dirs.aggregate_files_from_sample_dirs(sample_path, pattern, target_dir, add_prefix=False, verbose=False)

unravel.utilities.aggregate_files_from_sample_dirs.main()