unravel.voxel_stats.other.IF_outliers module

Loads .nii.gz images matching pattern, gets the mean intensity of voxels using the mask, checks for outliers (>3*SD +/- the mean), and plots results

Usage:

path/IF_outliers.py -p ‘<asterisk>.nii.gz’ -m path/mask.nii.gz -o means_in_mask_plot.pdf -v

unravel.voxel_stats.other.IF_outliers.parse_args()

unravel.voxel_stats.other.IF_outliers.mean_intensity_within_mask(image, mask)

unravel.voxel_stats.other.IF_outliers.detect_outliers(values)

unravel.voxel_stats.other.IF_outliers.main()