unravel.image_io.zarr_to_nii module

Use io_zarr_to_nii from UNRAVEL to convert an image.zarr to an image.nii.gz.

Note

• Outputs RAS orientation w/o respect to anatomical orientation

• Scaling not preserved

Usage:

io_zarr_to_nii -i path/img.zarr -o path/img.nii.gz [-v]

unravel.image_io.zarr_to_nii.parse_args()

unravel.image_io.zarr_to_nii.zarr_to_ndarray(img_path)

unravel.image_io.zarr_to_nii.define_zarr_to_nii_output(output_path)

unravel.image_io.zarr_to_nii.save_as_nii(ndarray, output_path)

unravel.image_io.zarr_to_nii.main()