unravel.utilities.toggle_samples module#
Use utils_toggle from UNRAVEL to inactivate/activate sample?? dirs for batch processing (i.e., prepend/remove “_” from dir name).
Note
For samples matching conditions in -c, “_” will be removed from the sample?? dir name.
For sampled not matching conditions in -c, “_” will be prepended to the sample?? dir name.
- The sample_key.csv file should have the following format:
dir_name,condition sample01,control sample02,treatment
Usage for toggling all sample?? dirs to active:#
utils_toggle [-d list of paths] [-p sample??] [-v]
Usage for activating sample?? dirs for certain conditions:#
utils_toggle -sk <path/sample_key.csv> -c <Saline MDMA> [-d list of paths] [-p sample??] [-v]