unravel.register.reg_check_fsleyes module

Use reg_check_fsleyes (rcf) from UNRAVEL to check registration in fsleyes.

Prerequisites:

• fsleyes must be installed.

• reg_check to aggregate the fixed_reg_in, warped_atlas, and optionally the original autofluorescence image.

• Set up LUT for the atlas in FSLeyes (see “Setting up Allen brain atlas coloring in FSLeyes” at https://b-heifets.github.io/UNRAVEL/guide.html#reg-check)

Usage:

reg_check_fsleyes [-fri fixed_reg_in] [-af autofl_img] [-wa warped_atlas] [-min min_val] [-max max_val] [-og] [-af autofl_img] [-d list of paths]

unravel.register.reg_check_fsleyes.parse_args()

unravel.register.reg_check_fsleyes.main()