unravel.register.reg_compare module#
Use reg_compare (rcmp) from UNRAVEL to aggregate registration outputs across many samples
into one directory for side-by-side comparison (e.g., with reg_compare_fsleyes / rcmpf).
- This is a generalized version of reg_check which can:
Copy ONE autofluo (or fixed reg input) per sample
Copy MULTIPLE atlas outputs per sample from multiple reg_outputs* folders
Prepend the sample ID to each copied file
Add a suffix to atlas filenames to avoid collisions (default: derived from source folder name)
Suffix examples:
reg_outputs -> ‘’
reg_outputs_1 -> __1
reg_outputs_2 -> __2
Note
Existing files in the target directory are overwritten when recopied
Files no longer produced are left untouched.
Usage:#
reg_compare [-td <path/target_output_dir>] [-afd <autofl_dir>] [-afn <autofl_name>] [-as folder:file …] [–suffix_map folder=suffix …] [-d list of paths] [-p sample??] [-v]
Usage for aggregating registration outputs:#
rcmp -td reg_compare -ro ‘reg_outputs<asterisk>’ -afd reg_outputs [-d list of paths] [-p sample??] [-v]