unravel.image_tools.means_in_mask module

Use img_means_in_mask or means_in_mask from UNRAVEL to calculate the mean intensity for each image within a mask.

Usage:

means_in_mask -i path/to/images/*.nii.gz -m path/to/mask.nii.gz [-o mean_in_mask.csv] [-v]

unravel.image_tools.means_in_mask.parse_args()

unravel.image_tools.means_in_mask.main()