unravel.register.reg_compare_fsleyes module#

Use reg_compare_fsleyes (rcmpf or rf) from UNRAVEL to visualize registration results in FSLeyes for multiple samples in a single session.

Two usage modes:

  1. Aggregated mode (default): Run inside a directory containing files named like: sample01_autofl_50um_masked_fixed_reg_input.nii.gz, sample01_atlas_`*`_in_tissue_space*.nii.gz Files are grouped by sample prefix (sample??_). Such directories can be created using reg_compare to aggregate registration outputs across samples.

  2. Single-sample mode: Run inside a sample directory or inside a reg_outputs* directory. Registration outputs are loaded directly from reg_outputs* folders.

Behavior:

  • Loads one autofluo/underlay per sample (if present)

  • Loads all matching atlas overlays per sample

  • Opens one FSLeyes instance with the first sample visible

Usage:#

reg_compare_fsleyes [-d dir] [-af autofl_img] [-a atlas …] [-min min_val] [-max max_val] [-l lut_name] [-al alpha_value] [-p pattern] [-v]

unravel.register.reg_compare_fsleyes.parse_args()[source]#
unravel.register.reg_compare_fsleyes.main()[source]#