unravel.allen_institute.abca.merfish.merfish_join_expression module

Use abca_merfish_join_expression (mje) from UNRAVEL to join [filtered] cell metadata with MERFISH expression data for a specified gene from the ABCA.

Note

• https://alleninstitute.github.io/abc_atlas_access/notebooks/merfish_tutorial_part_2b.html

Output:

• A CSV file with the joined data (input_<gene>_expression.csv)

Usage:

abca_merfish_join_expression -i path/filtered_cells.csv -b path/base_dir -g gene [-im] [-v]

unravel.allen_institute.abca.merfish.merfish_join_expression.parse_args()

unravel.allen_institute.abca.merfish.merfish_join_expression.main()