unravel.allen_institute.genetic_tools_atlas.bbox_crop module#
Use gta_bbox_crop (gta_bc) from UNRAVEL to crop an image using a bounding box and save it as a TIFF series.
Note
For simplicity and processing with Ilastik, this outputs as a TIFF series.
The TIFF series can be converted with
io_convert_img(conv) to other formats if needed.
Usage:#
bbox_crop [-i red] [-a green] [–force] [-d ID_123 ID_456 …] [-p pattern] [-v]