unravel.warp.to_fixed module#
Use warp_to_fixed
(w2f
) from UNRAVEL to forward warp a moving image (e.g., from atlas space) to fixed image space (e.g., tissue space). The input/output do not need padding.
Note
Run this from the folder containing reg_outputs.
This script is for warping between different atlas spaces. For warping from atlas space to tissue space, use
to_native
.
Usage:#
warp_to_fixed -f reg_inputs/autofl_50um_masked.nii.gz -m path/moving_img.nii.gz -o path/warped_img.nii.gz [-ro reg_outputs] [-fri autofl_50um_masked_fixed_reg_input.nii.gz] [-inp multiLabel] [-v]