unravel.abca.sunburst.sunburst module

Use abca_sunburst or sb from UNRAVEL to generate a sunburst plot of cell type proportions across all ontological levels.

Prereqs:

• merfish_filter.py

Outputs:

• path/input_sunburst.csv and [input_path/ABCA_sunburst_colors.csv]

Note

• LUT location: unravel/core/csvs/ABCA/ABCA_sunburst_colors.csv

Next steps:

• Use input_sunburst.csv to make a sunburst plot or regional volumes in Flourish Studio (https://app.flourish.studio/)

• It can be pasted into the Data tab (categories columns = cell type columns, Size by = percent column)

• Preview tab: Hierarchy -> Depth to 5, Colors -> paste hex codes from ABCA_sunburst_colors.csv into Custom overrides

Usage:

abca_sunburst -i path/cell_metadata_filtered.csv [-n] [-l] [-v]

unravel.abca.sunburst.sunburst.parse_args()

unravel.abca.sunburst.sunburst.main()