unravel.abca.sunburst.sunburst module#
Use abca_sunburst
or sb
from UNRAVEL to generate a sunburst plot of cell type proportions across all ontological levels.
- Prereqs:
merfish_filter.py
- Outputs:
path/input_sunburst.csv and [input_path/ABCA_sunburst_colors.csv]
Note
LUT location: unravel/core/csvs/ABCA/ABCA_sunburst_colors.csv
- Next steps:
Use input_sunburst.csv to make a sunburst plot or regional volumes in Flourish Studio (https://app.flourish.studio/)
It can be pasted into the Data tab (categories columns = cell type columns, Size by = percent column)
Preview tab: Hierarchy -> Depth to 5, Colors -> paste hex codes from ABCA_sunburst_colors.csv into Custom overrides
Usage:#
abca_sunburst -i path/cell_metadata_filtered.csv [-n] [-l] [-v]