unravel.abca.sunburst.sunburst_filter module

Use abca_sunburst_filter or sbf from UNRAVEL to filter ABCA sunburst expression data, keeping cells with high expression at any level (class, subclass, supertype, cluster).

Prereqs:

• abca_suburst_expression

Notes

• Use LUTs from abca_suburst_expression for coloring the sunburst plot.

Usage for first run:

abca_sunburst_filter -i path/main_ABCA_sunburst_expression.csv -g geneX -o ABCA_sunburst_filtered/ [-n] [-c 10] [-t 6]

Usage to apply filtering from another dataset:

abca_sunburst_filter -i path/_main_ABCA_sunburst_filter.csv -a path/secondary_ABCA_sunburst_expression.csv -g geneX -o new_output [-n] [-c 10] [-t 6]

unravel.abca.sunburst.sunburst_filter.parse_args()

unravel.abca.sunburst.sunburst_filter.main()