unravel.image_io.io_img module

Use io_img from UNRAVEL to load a 3D image, [get metadata], and save as the specified image type.

Input image types:

.czi, .nii.gz, .ome.tif series, .tif series, .h5, .zarr

Output image types:

.nii.gz, .tif series, .zarr, .h5

Usage:

io_img -i path/to/image.czi -x 3.5232 -z 6 [-c 0] [-o path/to/tif_dir] [-d np.uint8] [-r path/to/reference.nii.gz] [-ao zyx] [-v]

unravel.image_io.io_img.parse_args()

unravel.image_io.io_img.main()