unravel.image_tools package

• unravel.image_tools.avg module
  • Usage:
  • parse_args()
  • main()
• unravel.image_tools.bbox module
  • Usage:
  • parse_args()
  • main()
• unravel.image_tools.extend module
  • parse_args()
  • extend_one_side_3d_array()
  • main()
• unravel.image_tools.max module
  • Usage:
  • parse_args()
  • find_max_intensity()
  • main()
• unravel.image_tools.pad module
  • Usage:
  • parse_args()
  • main()
• unravel.image_tools.resample module
  • Usage:
  • parse_args()
  • main()
• unravel.image_tools.spatial_averaging module
  • Usage:
  • parse_args()
  • spatial_average_3D()
  • apply_2D_mean_filter()
  • spatial_average_2D()
  • main()
• unravel.image_tools.DoG module
  • Usage:
  • parse_args()
  • load_tif()
  • difference_of_gaussians()
  • save_tif()
  • main()
• unravel.image_tools.rb module
  • Usage:
  • parse_args()
  • load_tif()
  • rolling_ball_subtraction()
  • save_tif()
  • main()
• unravel.image_tools.transpose_axes module
  • Usage:
  • parse_args()
  • transpose_img()
  • main()
• unravel.image_tools.unique_intensities module
  • Usage for printing all non-zero intensities:
  • Usage for printing the number of voxels for each intensity that is present:
  • Usage for printing unique intensities w/ a min cluster size > 100 voxels:
  • parse_args()
  • uniq_intensities()
  • main()
• unravel.image_tools.resample_points module
  • Usage:
  • parse_args()
  • resample_and_convert_points()
  • main()
• unravel.image_tools.atlas package
  • unravel.image_tools.atlas.relabel_nii module
    • Usage:
    • parse_args()
    • main()
  • unravel.image_tools.atlas.wireframe module
    • Usage:
    • parse_args()
    • process_intensity()
    • generate_wireframe()
    • main()