unravel.register package

• unravel.register.reg_prep module
  • Usage:
  • parse_args()
  • reg_prep()
  • main()
• unravel.register.reg module
  • Usage for tissue registration with brain mask and bias correction:
  • Usage for tissue registration without brain mask and bias correction:
  • Usage for atlas to atlas registration:
  • Usage for template to template registration:
  • parse_args()
  • bias_correction()
  • main()
• unravel.register.affine_initializer module
  • Python usage:
  • Usage:
  • parse_args()
  • affine_initializer_wrapper()
  • run_with_timeout()
  • main()
• unravel.register.affine_initializer_check module
  • Usage:
  • parse_args()
  • affine_initializer_check()
  • main()
• unravel.register.reg_check module
  • Usage:
  • parse_args()
  • main()
• unravel.register.reg_check_fsleyes module
  • Usage:
  • parse_args()
  • main()
• unravel.register.reg_compare module
  • Usage:
  • Usage for aggregating registration outputs:
  • parse_args()
  • main()
• unravel.register.reg_compare_fsleyes module
  • Usage:
  • parse_args()
  • main()
• unravel.register.reg_check_brain_mask module
  • Usage:
  • parse_args()
  • main()
• unravel.register.bias_correct module
  • Usage:
  • parse_args()
  • main()
• unravel.register.reg_background module
  • Usage:
  • parse_args()
  • process_slice()
  • rolling_ball_background_opencv_parallel()
  • main()
• unravel.register.adjust_template module
  • Example of use (separate steps):
  • Usage:
  • parse_args()
  • mask_from_ids()
  • boundary_band_mask()
  • safe_cast_like()
  • main()