unravel.region_stats package

• unravel.region_stats.rstats module
  • Usage if the atlas is already in native space from warp_to_native:
  • Usage if the native atlas is not available; it is not saved (faster):
  • Usage for mean intensity only within segmented voxels in each region:
  • parse_args()
  • get_atlas_region_at_coords()
  • count_cells_in_regions()
  • calculate_regional_volumes()
  • calculate_regional_densities()
  • interleave_blank_slices()
  • calculate_regional_means()
  • main()
• unravel.region_stats.rstats_summary module
  • Usage for Tukey tests:
  • Usage for t-tests:
  • Usage for mean intensity in segmentation mask within each region:
  • parse_args()
  • get_region_details()
  • parse_color_argument()
  • parse_exclude_hemi()
  • mask_excluded_side()
  • summarize_significance()
  • process_and_plot_data()
  • main()
• unravel.region_stats.rstats_mean_IF module
  • Usage:
  • parse_args()
  • calculate_mean_intensity()
  • write_to_csv()
  • main()
• unravel.region_stats.rstats_mean_IF_in_segmented_voxels module
  • Usage
  • parse_args()
  • calculate_mean_intensity()
  • write_to_csv()
  • main()
• unravel.region_stats.rstats_mean_IF_summary module
  • Usage for t-tests:
  • Usage for Tukey’s tests w/ reordering and renaming of conditions:
  • Usage with a custom atlas:
  • parse_args()
  • load_data()
  • get_max_region_id_from_csvs()
  • get_region_details()
  • get_all_region_ids()
  • filter_region_ids()
  • remove_zero_intensity_regions()
  • perform_t_tests()
  • plot_data()
  • main()