unravel.allen_institute package

• unravel.allen_institute.abca package
  • unravel.allen_institute.abca.cache module
  • unravel.allen_institute.abca.merfish package
    • unravel.allen_institute.abca.merfish.utils module
    • unravel.allen_institute.abca.merfish.merfish module
    • unravel.allen_institute.abca.merfish.merfish_slice module
    • unravel.allen_institute.abca.merfish.merfish_filter module
    • unravel.allen_institute.abca.merfish.merfish_filter_by_mask module
    • unravel.allen_institute.abca.merfish.merfish_cells_to_nii module
    • unravel.allen_institute.abca.merfish.merfish_expression_to_nii module
    • unravel.allen_institute.abca.merfish.merfish_join_gene module
  • unravel.allen_institute.abca.sunburst package
    • unravel.allen_institute.abca.sunburst.sunburst module
    • unravel.allen_institute.abca.sunburst.sunburst_expression module
    • unravel.allen_institute.abca.sunburst.sunburst_filter_by_expression module
    • unravel.allen_institute.abca.sunburst.sunburst_filter_by_proportion module
    • unravel.allen_institute.abca.sunburst.mean_expression_color_scale module
    • unravel.allen_institute.abca.sunburst.percent_expression_color_scale module
  • unravel.allen_institute.abca.scRNA_seq package
    • unravel.allen_institute.abca.scRNA_seq.filter module
    • unravel.allen_institute.abca.scRNA_seq.expression module
    • unravel.allen_institute.abca.scRNA_seq.join_gene module
• unravel.allen_institute.genetic_tools_atlas package
  • unravel.allen_institute.genetic_tools_atlas.download module
  • unravel.allen_institute.genetic_tools_atlas.simplify_metadata module
    • Usage:
    • parse_args()
    • main()
  • unravel.allen_institute.genetic_tools_atlas.org_samples module
    • Usage:
    • parse_args()
    • org_samples()
    • main()
  • unravel.allen_institute.genetic_tools_atlas.auto_crop module
    • Usage:
    • parse_args()
    • create_outline()
    • main()
  • unravel.allen_institute.genetic_tools_atlas.bbox_crop module
    • Usage:
    • parse_args()
    • main()
• unravel.allen_institute.mapmysections package
  • unravel.allen_institute.mapmysections.cell_type_proportions_concat module
    • parse_args()
    • main()
  • unravel.allen_institute.mapmysections.cell_type_proportions module
    • Usage:
    • Usage for MapMySections (VISp example):
    • Usage for MapMySections (all regions):
    • parse_args()
    • cell_type_proportions()
    • main()
  • unravel.allen_institute.mapmysections.csv_concat_with_source module
    • Usage:
    • parse_args()
    • main()
  • unravel.allen_institute.mapmysections.segmentation_summary module
    • Usage:
    • parse_args()
    • get_seg_voxel_counts()
    • compute_proportions()
    • process_and_write_line()
    • main()
  • unravel.allen_institute.mapmysections.soma_ratio module