unravel.coordinates package

• unravel.coordinates.points_to_img module
  • Usage:
  • parse_args()
  • threshold_points_by_region_id()
  • load_and_prepare_points()
  • points_to_img()
  • main()
• unravel.coordinates.img_to_points module
  • Usage:
  • parse_args()
  • img_to_points()
  • main()
• unravel.coordinates.physical_points_to_img module
  • Usage:
  • parse_args()
  • parse_spacing()
  • validate_columns()
  • physical_to_voxel_coords()
  • main()
• unravel.coordinates.physical_points_add_regions module
  • Usage:
  • Usage example for one recording:
  • parse_args()
  • lookup_region_ids()
  • main()
• unravel.coordinates.refine_catchall_regions module
  • Usage:
  • parse_args()
  • load_region_info()
  • parse_id_path()
  • build_region_lookup()
  • get_descendant_lowered_ids()
  • choose_catchall_row()
  • build_catchall_candidate_map()
  • nearest_descendant_region_id()
  • add_region_metadata_for_refined_ids()
  • main()
• unravel.coordinates.points_compressor module
  • Usage:
  • parse_args()
  • pack_points()
  • unpack_points()
  • summarize_points()
  • points_compressor()
  • main()
• unravel.coordinates.points_to_atlas module
  • Usage:
  • parse_args()
  • main()
• unravel.coordinates.resample_points module
  • Usage:
  • parse_args()
  • resample_and_convert_points()
  • main()
• unravel.coordinates.ccf30_points_to_merfish module
  • Usage:
  • parse_args()
  • ras_to_lps()
  • lps_to_ras()
  • voxel_to_physical_ras()
  • physical_ras_to_voxel()
  • calculate_padded_dimensions()
  • get_point_transformlist_moving_to_fixed()
  • apply_ants_point_transform()
  • main()
• unravel.coordinates.labeled_voxel_img_to_points module
  • Usage:
  • parse_args()
  • summarize_label_coords()
  • main()
• unravel.coordinates.points_to_labeled_voxel_img module
  • Usage:
  • parse_args()
  • aggregate_values()
  • choose_dtype()
  • main()
• unravel.coordinates.points_to_sphere_masks module
  • Usage:
  • parse_args()
  • parse_voxel_size()
  • sanitize_filename()
  • make_mask_name()
  • sphere_mask_for_coord()
  • main()